BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB009B03LP1|AL425977
(827 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig327 388 e-108
3x_Contig924 277 3e-74
>3x_Contig327
Length = 1076
Score = 388 bits (181), Expect = e-108
Identities = 192/199 (96%)
Strand = Plus / Plus
Query: 1 aattaattttggaggacttacacaataatgatttaatttattatatacatataaaacata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 aattaattttggaggacttacacaataatgatttaatttattatatacatataaaacata 808
Query: 61 ttctacttgttttaaagtttgtttaaattttaatctactattaattaatgtattttttga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 ttctacttgttttaaagtttgtttaaattttaatctactattaattaatgtattttttga 868
Query: 121 actatattcaattcaaccatctgttaataaaattccattaattatatatataatakkrkk 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 actatattcaattcaaccatctgttaataaaattccattaattatatatataatattatt 928
Query: 181 ggggattttaattatatat 199
|| |||||||||||||||
Sbjct: 929 tggaattttaattatatat 947
Score = 122 bits (57), Expect = 9e-28
Identities = 75/84 (89%)
Strand = Plus / Plus
Query: 245 tataaatcagtaccataaattgttaattttttattataataattathatyattattataa 304
||||||| ||||||||||||||||||||| ||||||||| |||||| || ||||||||||
Sbjct: 993 tataaattagtaccataaattgttaatttnttattataaaaattattattattattataa 1052
Query: 305 gamttataagavttattattataa 328
|| ||||||| |||||||||||
Sbjct: 1053 gaattataaggaatattattataa 1076
>3x_Contig924
Length = 2007
Score = 277 bits (129), Expect = 3e-74
Identities = 163/177 (92%), Gaps = 1/177 (0%)
Strand = Plus / Plus
Query: 439 tttttttatcaacttaatactcttgcgaaaggagtttattaatcccsagaaaattttaat 498
|||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 93 ttttttgatcaacttaatactcttgctaaaggagtttattaatcatgagaaaattttaat 152
Query: 499 acctgtaggaatcgmmawaatcattgtagccgatgtgaaataagctctagaatctgcatc 558
|||||||||||| | | |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 153 acctgtaggaattgcaataatcattgtagccgatgtgaaataagctctagtatctgcatc 212
Query: 559 taatcctacaatatacatawgatgtgatcataccaagcaaacctaayaatccaattg 615
||||||||||||||||||| ||||||||||||| ||| |||||||| ||||||||||
Sbjct: 213 taatcctacaatatacatatgatgtgatcatactaag-aaacctaataatccaattg 268
Score = 161 bits (75), Expect = 2e-39
Identities = 146/171 (85%), Gaps = 5/171 (2%)
Strand = Plus / Plus
Query: 662 agaataarttgatacgatatgysaaataasamcvmattwaataataattaawatataaah 721
||||||| ||||||||||||| |||||| | | || | ||||||||| |||||||
Sbjct: 315 agaataagttgatacgatatgtgaaataataccgaatccaggaataattaaaatataaac 374
Query: 722 ttttgggtkac-aaagawtc-aaatytaa-twatatatt-tcttttccc-aaatattatt 776
|| |||| || ||||| || |||| ||| | ||||||| ||||||||| ||||||||||
Sbjct: 375 ttcggggtgaccaaagaatccaaatctaaataatatattatcttttccccaaatattatt 434
Query: 777 ttttataatagcacgggtagactctataatatatatctcatatataatata 827
||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 tttgataatagcacgggtagactctataatatatatctcatatataatata 485
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.49 0.725 1.39
Gapped
Lambda K H
1.49 0.725 1.39
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7514
Number of Sequences: 1807
Number of extensions: 7514
Number of successful extensions: 339
Number of sequences better than 1.0e-20: 2
length of query: 827
length of database: 10,358,551
effective HSP length: 15
effective length of query: 812
effective length of database: 10,331,446
effective search space: 8389134152
effective search space used: 8389134152
T: 0
A: 40
X1: 5 (10.7 bits)
X2: 13 (27.9 bits)
S1: 11 (24.1 bits)
S2: 47 (101.3 bits)